The new version includes a lot of useful features in the Alignment Editor (AE): “Edit” menu in Sequence View got a new structure.“Navigation” and “Appearance” menus in Alignment Editor were restructured for better usability.The ClustalO tool is updated to the latest version.Residues with the most frequency/priority in the column.Residues should be colored according to their percentage number in the column (use the priorities,ĭescribed above, in case of equal percentage numbers).Specified by other rules which character to color, following priorities: T>U>G>C>A>B>D>H>K>M>R>S>V>W>Y>N. “Weak Similarities” color scheme: When there is a choice between two characters and it is not.To search by sequence names use the Search in Alignment Options Panel tab with the “Sequence Names” search context. The results will be selected and grouped to the top after the firstĬlick or to the bottom after the second click to the button. The “Search in Alignment” tab of the Options Panel. Grouping sequences in alignment by sequence names: To search for a pattern(s) in alignment go to.The Sort submenu in the Actions main menu or from the context menu.Īlso, you can use the General Options Panel tab: Sorting sequences in alignment by name and by length: You can sort sequences in alignment using.The new version includes a bunch of improvements in Alignment Editor: